IL_9B24_139

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9B24|1|Y|C|2279, 9B24|1|Y|U|2837, 9B24|1|Y|A|2838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_139 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1714

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9B24|1|Y|A|2278
9B24|1|Y|C|2279
9B24|1|Y|G|2280
*
9B24|1|Y|C|2836
9B24|1|Y|U|2837
9B24|1|Y|A|2838
9B24|1|Y|U|2839

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain o

Large ribosomal subunit protein uL22

Chain x

Large ribosomal subunit protein bL32