IL_9B24_142

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_142 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.3089

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9B24|1|Y|U|2308
9B24|1|Y|U|2309
9B24|1|Y|G|2310
*
9B24|1|Y|C|2456
9B24|1|Y|U|2457
9B24|1|Y|G|2458

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2

Chain t

Large ribosomal subunit protein bL28