IL_9B24_155

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9B24|1|Y|G|2800, 9B24|1|Y|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_155 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1461

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

9B24|1|Y|C|2734
9B24|1|Y|U|2735
9B24|1|Y|C|2736
*
9B24|1|Y|G|2798
9B24|1|Y|C|2799
9B24|1|Y|G|2800
9B24|1|Y|A|2801
9B24|1|Y|G|2802

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain x

Large ribosomal subunit protein bL32