IL_9B4Z_012

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9B4Z|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_012 not in the Motif Atlas

Geometric match to IL_8B0X_012

Geometric discrepancy: 0.0959

The information below is about IL_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9B4Z|1|AA|G|147
9B4Z|1|AA|G|148
9B4Z|1|AA|A|149
9B4Z|1|AA|U|150
9B4Z|1|AA|A|151
9B4Z|1|AA|A|152
9B4Z|1|AA|C|153
*
9B4Z|1|AA|G|168
9B4Z|1|AA|C|169
9B4Z|1|AA|U|170
9B4Z|1|AA|A|171
9B4Z|1|AA|A|172
9B4Z|1|AA|U|173
9B4Z|1|AA|A|174
9B4Z|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20