IL_9B4Z_025
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9B4Z|1|AA|A|532, 9B4Z|1|AA|U|534, 9B4Z|1|AA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B4Z_025 not in the Motif Atlas
- Geometric match to IL_8GLP_224
- Geometric discrepancy: 0.1152
- The information below is about IL_8GLP_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B4Z|1|AA|G|515
9B4Z|1|AA|U|516
9B4Z|1|AA|G|517
9B4Z|1|AA|C|518
9B4Z|1|AA|C|519
9B4Z|1|AA|A|520
9B4Z|1|AA|G|521
*
9B4Z|1|AA|C|528
9B4Z|1|AA|G|529
9B4Z|1|AA|G|530
9B4Z|1|AA|U|531
9B4Z|1|AA|A|532
9B4Z|1|AA|A|533
9B4Z|1|AA|U|534
9B4Z|1|AA|A|535
9B4Z|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AD
- 30S ribosomal protein S4
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
- Chain AW
- Transfer RNA; tRNA
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