IL_9B4Z_081

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9B4Z|1|BA|G|801, 9B4Z|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_081 not in the Motif Atlas

Geometric match to IL_8B0X_080

Geometric discrepancy: 0.0498

The information below is about IL_8B0X_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9B4Z|1|BA|G|674
9B4Z|1|BA|A|675
9B4Z|1|BA|A|676
9B4Z|1|BA|A|677
9B4Z|1|BA|C|678
*
9B4Z|1|BA|G|799
9B4Z|1|BA|A|800
9B4Z|1|BA|G|801
9B4Z|1|BA|A|802
9B4Z|1|BA|U|803
9B4Z|1|BA|A|804
9B4Z|1|BA|G|805
9B4Z|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15