IL_9B4Z_116

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9B4Z|1|BA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_116 not in the Motif Atlas

Geometric match to IL_8B0X_114

Geometric discrepancy: 0.0708

The information below is about IL_8B0X_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9B4Z|1|BA|C|1417
9B4Z|1|BA|G|1418
9B4Z|1|BA|A|1419
9B4Z|1|BA|A|1420
9B4Z|1|BA|G|1421
*
9B4Z|1|BA|C|1577
9B4Z|1|BA|U|1578
9B4Z|1|BA|A|1579
9B4Z|1|BA|A|1580
9B4Z|1|BA|G|1581

Current chains

Chain BA

23S ribosomal RNA

Nearby chains