IL_9B4Z_130

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9B4Z|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_130 not in the Motif Atlas

Geometric match to IL_8B0X_127

Geometric discrepancy: 0.0603

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9B4Z|1|BA|C|1686
9B4Z|1|BA|G|1687
9B4Z|1|BA|U|1688
9B4Z|1|BA|A|1689
9B4Z|1|BA|A|1690
9B4Z|1|BA|C|1691
*
9B4Z|1|BA|G|1696
9B4Z|1|BA|G|1697
9B4Z|1|BA|A|1698
9B4Z|1|BA|G|1699
9B4Z|1|BA|A|1700
9B4Z|1|BA|A|1701
9B4Z|1|BA|G|1702

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2