IL_9B4Z_135

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9B4Z|1|BA|A|1801, 9B4Z|1|BA|C|1816, 9B4Z|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_135 not in the Motif Atlas

Geometric match to IL_8B0X_132

Geometric discrepancy: 0.0481

The information below is about IL_8B0X_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9B4Z|1|BA|U|1798
9B4Z|1|BA|G|1799
9B4Z|1|BA|C|1800
9B4Z|1|BA|A|1801
9B4Z|1|BA|A|1802
9B4Z|1|BA|A|1803
9B4Z|1|BA|C|1804
*
9B4Z|1|BA|G|1813
9B4Z|1|BA|G|1814
9B4Z|1|BA|A|1815
9B4Z|1|BA|C|1816
9B4Z|1|BA|G|1817
9B4Z|1|BA|U|1818
9B4Z|1|BA|A|1819
9B4Z|1|BA|U|1820
9B4Z|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2