IL_9B4Z_167

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9B4Z|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_167 not in the Motif Atlas

Geometric match to IL_8B0X_160

Geometric discrepancy: 0.0475

The information below is about IL_8B0X_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9B4Z|1|BA|C|2636
9B4Z|1|BA|U|2637
9B4Z|1|BA|G|2638
9B4Z|1|BA|A|2639
9B4Z|1|BA|G|2640
*
9B4Z|1|BA|C|2774
9B4Z|1|BA|G|2775
9B4Z|1|BA|A|2776
9B4Z|1|BA|G|2777
9B4Z|1|BA|A|2778
9B4Z|1|BA|U|2779
9B4Z|1|BA|G|2780
9B4Z|1|BA|A|2781
9B4Z|1|BA|G|2782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13