IL_9B4Z_182

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_182 not in the Motif Atlas

Geometric match to IL_8B0X_175

Geometric discrepancy: 0.0385

The information below is about IL_8B0X_175

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71138.1

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9B4Z|1|BB|C|71
9B4Z|1|BB|G|72
9B4Z|1|BB|A|73
9B4Z|1|BB|U|74
9B4Z|1|BB|G|75
9B4Z|1|BB|G|76
9B4Z|1|BB|U|77
9B4Z|1|BB|A|78
9B4Z|1|BB|G|79
*
9B4Z|1|BB|C|97
9B4Z|1|BB|G|98
9B4Z|1|BB|A|99
9B4Z|1|BB|G|100
9B4Z|1|BB|A|101
9B4Z|1|BB|G|102
9B4Z|1|BB|U|103
9B4Z|1|BB|A|104
9B4Z|1|BB|G|105

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25