IL_9B50_052

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

9B50|1|AA|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_052 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.1254

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9B50|1|AA|C|1158
9B50|1|AA|U|1159
9B50|1|AA|G|1160
9B50|1|AA|C|1161
*
9B50|1|AA|G|1175
9B50|1|AA|A|1176
9B50|1|AA|G|1177
9B50|1|AA|G|1178
9B50|1|AA|A|1179
9B50|1|AA|A|1180
9B50|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9