IL_9B50_059

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_059 not in the Motif Atlas

Geometric match to IL_4LFB_069

Geometric discrepancy: 0.1377

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B50|1|AA|G|1405
9B50|1|AA|U|1406
9B50|1|AA|C|1407
*
9B50|1|AA|G|1494
9B50|1|AA|U|1495
9B50|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BA

23S ribosomal RNA