IL_9B50_062

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_062 not in the Motif Atlas

Geometric match to IL_8B0X_061

Geometric discrepancy: 0.1452

The information below is about IL_8B0X_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9B50|1|AA|G|1416
9B50|1|AA|G|1417
9B50|1|AA|A|1418
9B50|1|AA|G|1419
*
9B50|1|AA|U|1481
9B50|1|AA|G|1482
9B50|1|AA|A|1483
9B50|1|AA|C|1484

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BA

23S ribosomal RNA