IL_9B50_086

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9B50|1|BA|G|776, 9B50|1|BA|A|788, 9B50|1|BA|A|789, 9B50|1|BA|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_086 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.0357

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|G|775
9B50|1|BA|G|776
9B50|1|BA|G|777
*
9B50|1|BA|C|787
9B50|1|BA|A|788
9B50|1|BA|A|789
9B50|1|BA|U|790
9B50|1|BA|C|791

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BS

50S ribosomal protein L22