IL_9B50_093

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_093 not in the Motif Atlas

Geometric match to IL_8B0X_092

Geometric discrepancy: 0.0734

The information below is about IL_8B0X_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|G|864
9B50|1|BA|C|865
9B50|1|BA|A|866
9B50|1|BA|C|867
9B50|1|BA|U|868
*
9B50|1|BA|A|909
9B50|1|BA|A|910
9B50|1|BA|A|911
9B50|1|BA|C|912

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA

Chain BM

50S ribosomal protein L16