IL_9B50_101

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9B50|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_101 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1203

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9B50|1|BA|U|1018
9B50|1|BA|U|1019
9B50|1|BA|A|1020
9B50|1|BA|A|1021
9B50|1|BA|G|1022
9B50|1|BA|U|1023
9B50|1|BA|G|1024
*
9B50|1|BA|C|1140
9B50|1|BA|U|1141
9B50|1|BA|A|1142
9B50|1|BA|A|1143
9B50|1|BA|A|1144

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BJ

50S ribosomal protein L13