IL_9B50_107

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9B50|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_107 not in the Motif Atlas

Geometric match to IL_8B0X_105

Geometric discrepancy: 0.0585

The information below is about IL_8B0X_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

9B50|1|BA|C|1196
9B50|1|BA|G|1197
9B50|1|BA|U|1198
*
9B50|1|BA|A|1247
9B50|1|BA|G|1248
9B50|1|BA|U|1249
9B50|1|BA|G|1250

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20