IL_9B50_113

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_113 not in the Motif Atlas

Geometric match to IL_8B0X_111

Geometric discrepancy: 0.0562

The information below is about IL_8B0X_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9B50|1|BA|C|1351
9B50|1|BA|U|1352
9B50|1|BA|A|1353
9B50|1|BA|A|1354
9B50|1|BA|G|1355
*
9B50|1|BA|C|1376
9B50|1|BA|G|1377
9B50|1|BA|A|1378
9B50|1|BA|U|1379
9B50|1|BA|G|1380

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2