IL_9B50_114

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_114 not in the Motif Atlas

Geometric match to IL_8B0X_112

Geometric discrepancy: 0.0509

The information below is about IL_8B0X_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B50|1|BA|C|1357
9B50|1|BA|G|1358
9B50|1|BA|A|1359
9B50|1|BA|G|1360
9B50|1|BA|G|1361
*
9B50|1|BA|C|1370
9B50|1|BA|G|1371
9B50|1|BA|U|1372
9B50|1|BA|A|1373
9B50|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BX

50S ribosomal protein L28