IL_9B50_125

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_125 not in the Motif Atlas

Geometric match to IL_8B0X_123

Geometric discrepancy: 0.0508

The information below is about IL_8B0X_123

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9B50|1|BA|G|1651
9B50|1|BA|A|1652
9B50|1|BA|G|1653
9B50|1|BA|A|1654
9B50|1|BA|A|1655
9B50|1|BA|C|1656
*
9B50|1|BA|G|2004
9B50|1|BA|A|2005
9B50|1|BA|C|2006

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17