IL_9B50_138

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_138 not in the Motif Atlas

Geometric match to IL_8B0X_135

Geometric discrepancy: 0.171

The information below is about IL_8B0X_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

9B50|1|BA|G|1846
9B50|1|BA|A|1847
9B50|1|BA|A|1848
9B50|1|BA|G|1849
*
9B50|1|BA|C|1893
9B50|1|BA|C|1894

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

16S ribosomal RNA

Chain BC

50S ribosomal protein L2