IL_9B50_156

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_156 not in the Motif Atlas

Geometric match to IL_8B0X_148

Geometric discrepancy: 0.0463

The information below is about IL_8B0X_148

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9B50|1|BA|C|2350
9B50|1|BA|G|2351
9B50|1|BA|A|2352
9B50|1|BA|G|2353
*
9B50|1|BA|C|2364
9B50|1|BA|G|2365
9B50|1|BA|A|2366
9B50|1|BA|G|2367

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BW

50S ribosomal protein L27