IL_9B50_170

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9B50|1|BA|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_170 not in the Motif Atlas

Geometric match to IL_8B0X_162

Geometric discrepancy: 0.0567

The information below is about IL_8B0X_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9B50|1|BA|U|2680
9B50|1|BA|C|2681
9B50|1|BA|A|2682
9B50|1|BA|C|2683
9B50|1|BA|U|2684
*
9B50|1|BA|A|2725
9B50|1|BA|A|2726
9B50|1|BA|A|2727

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19