IL_9B50_173

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9B50|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_173 not in the Motif Atlas

Geometric match to IL_8B0X_165

Geometric discrepancy: 0.0519

The information below is about IL_8B0X_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9B50|1|BA|G|2737
9B50|1|BA|A|2738
9B50|1|BA|U|2739
9B50|1|BA|A|2740
9B50|1|BA|A|2741
9B50|1|BA|G|2742
*
9B50|1|BA|C|2762
9B50|1|BA|G|2763
9B50|1|BA|A|2764
9B50|1|BA|A|2765
9B50|1|BA|A|2766
9B50|1|BA|C|2767

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13