IL_9B50_179

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

9B50|1|BB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_179 not in the Motif Atlas

Geometric match to IL_9DFE_110

Geometric discrepancy: 0.2289

The information below is about IL_9DFE_110

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9B50|1|BB|C|17
9B50|1|BB|G|18
*
9B50|1|BB|U|65
9B50|1|BB|A|66
9B50|1|BB|G|67

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA