IL_9B51_020

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B51_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.06

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9B51|1|AA|U|409
9B51|1|AA|G|410
9B51|1|AA|A|411
9B51|1|AA|A|412
9B51|1|AA|G|413
9B51|1|AA|A|414
9B51|1|AA|A|415
9B51|1|AA|G|416
*
9B51|1|AA|U|427
9B51|1|AA|G|428
9B51|1|AA|U|429
9B51|1|AA|A|430
9B51|1|AA|A|431
9B51|1|AA|A|432
9B51|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4