IL_9B51_105

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9B51|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B51_105 not in the Motif Atlas

Geometric match to IL_8B0X_104

Geometric discrepancy: 0.111

The information below is about IL_8B0X_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9B51|1|BA|C|1043
9B51|1|BA|C|1044
9B51|1|BA|C|1045
9B51|1|BA|A|1046
9B51|1|BA|G|1047
9B51|1|BA|A|1048
9B51|1|BA|C|1049
9B51|1|BA|A|1050
9B51|1|BA|G|1051
*
9B51|1|BA|U|1108
9B51|1|BA|C|1109
9B51|1|BA|G|1110
9B51|1|BA|A|1111
9B51|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6