IL_9B51_152

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

9B51|1|BA|U|2111, 9B51|1|BA|U|2118, 9B51|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B51_152 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3904

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

9B51|1|BA|G|2110
9B51|1|BA|U|2111
9B51|1|BA|G|2112
9B51|1|BA|U|2113
9B51|1|BA|A|2114
9B51|1|BA|G|2115
9B51|1|BA|G|2116
9B51|1|BA|A|2117
9B51|1|BA|U|2118
9B51|1|BA|A|2119
9B51|1|BA|G|2120
*
9B51|1|BA|C|2178
9B51|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA