IL_9BDL_004

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9BDL|1|A18S|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.0861

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9BDL|1|A18S|G|41
9BDL|1|A18S|A|42
9BDL|1|A18S|U|43
9BDL|1|A18S|U|44
9BDL|1|A18S|A|45
9BDL|1|A18S|A|46
9BDL|1|A18S|G|47
*
9BDL|1|A18S|C|479
9BDL|1|A18S|G|480
9BDL|1|A18S|C|481

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS23

40S ribosomal protein S23