IL_9BDL_014

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9BDL|1|A18S|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_014 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0894

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9BDL|1|A18S|G|145
9BDL|1|A18S|G|146
9BDL|1|A18S|A|147
9BDL|1|A18S|U|148
9BDL|1|A18S|A|149
9BDL|1|A18S|A|150
9BDL|1|A18S|C|151
*
9BDL|1|A18S|G|167
9BDL|1|A18S|C|168
9BDL|1|A18S|U|169
9BDL|1|A18S|A|170
9BDL|1|A18S|A|171
9BDL|1|A18S|U|172
9BDL|1|A18S|A|173
9BDL|1|A18S|C|174

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24