IL_9BDL_029

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAC,GUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_029 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.1837

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9BDL|1|A18S|U|530
9BDL|1|A18S|A|531
9BDL|1|A18S|C|532
*
9BDL|1|A18S|G|552
9BDL|1|A18S|U|553
9BDL|1|A18S|A|554

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS30

40S ribosomal protein S30