IL_9BDL_042

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_042 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1347

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

9BDL|1|A18S|A|802
9BDL|1|A18S|C|803
*
9BDL|1|A18S|G|860
9BDL|1|A18S|A|861
9BDL|1|A18S|A|862
9BDL|1|A18S|U|863

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS07

Small ribosomal subunit protein eS7

Chain AS11

40S ribosomal protein S11

Chain AS22

40S ribosomal protein S15a

Chain AS23

40S ribosomal protein S23