IL_9BDL_057

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_057 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1853

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9BDL|1|A18S|U|1101
9BDL|1|A18S|G|1102
9BDL|1|A18S|C|1103
*
9BDL|1|A18S|G|1129
9BDL|1|A18S|G|1130
9BDL|1|A18S|G|1131

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a

Chain AS13

40S ribosomal protein S13

Chain AS17

40S ribosomal protein S17

Chain AS27

40S ribosomal protein S27