IL_9BDL_059

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_059 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0733

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|G|1168
9BDL|1|A18S|G|1169
9BDL|1|A18S|A|1170
9BDL|1|A18S|G|1171
9BDL|1|A18S|U|1172
9BDL|1|A18S|A|1173
9BDL|1|A18S|U|1174
9BDL|1|A18S|G|1175
*
9BDL|1|A18S|U|1186
9BDL|1|A18S|G|1187
9BDL|1|A18S|A|1188
9BDL|1|A18S|A|1189
9BDL|1|A18S|A|1190
9BDL|1|A18S|C|1191

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL41

eL41

Chain AS23

40S ribosomal protein S23