IL_9BDL_075
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 9BDL|1|A18S|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_075 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.5646
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
9BDL|1|A18S|C|1395
9BDL|1|A18S|A|1396
9BDL|1|A18S|U|1397
9BDL|1|A18S|G|1398
9BDL|1|A18S|C|1399
*
9BDL|1|A18S|G|1447
9BDL|1|A18S|A|1448
9BDL|1|A18S|G|1449
9BDL|1|A18S|G|1450
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ARAC
- Receptor of activated protein C kinase 1
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS17
- 40S ribosomal protein S17
- Chain AS20
- 40S ribosomal protein S20
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