IL_9BDL_079

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_079 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1288

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9BDL|1|A18S|A|1537
9BDL|1|A18S|C|1538
9BDL|1|A18S|U|1539
*
9BDL|1|A18S|A|1594
9BDL|1|A18S|U|1595
9BDL|1|A18S|U|1596

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS05

Ribosomal protein S5

Chain AS18

40S ribosomal protein S18

Chain AS19

Small ribosomal subunit protein eS19

Chain AS25

40S ribosomal protein S25