IL_9BDL_093

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_093 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.172

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9BDL|1|A18S|C|1742
9BDL|1|A18S|G|1743
9BDL|1|A18S|G|1744
9BDL|1|A18S|A|1745
9BDL|1|A18S|U|1746
*
9BDL|1|A18S|A|1788
9BDL|1|A18S|G|1789
9BDL|1|A18S|A|1790
9BDL|1|A18S|A|1791
9BDL|1|A18S|G|1792

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL24

Ribosomal protein L24

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8