IL_9BDL_138

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_138 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.1959

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9BDL|1|A28S|C|1097
9BDL|1|A28S|G|1098
*
9BDL|1|A28S|C|1197
9BDL|1|A28S|G|1198
9BDL|1|A28S|G|1199

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL20

60S ribosomal protein L18a

Chain AL21

60S ribosomal protein L21