IL_9BDL_173
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9BDL|1|A28S|C|1935, 9BDL|1|A28S|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_173 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1577
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BDL|1|A28S|G|1933
9BDL|1|A28S|A|1934
9BDL|1|A28S|C|1935
9BDL|1|A28S|C|1936
9BDL|1|A28S|C|1937
9BDL|1|A28S|C|1938
9BDL|1|A28S|A|1939
9BDL|1|A28S|G|1940
9BDL|1|A28S|A|1941
9BDL|1|A28S|A|1942
9BDL|1|A28S|A|1943
9BDL|1|A28S|A|1944
*
9BDL|1|A28S|U|2038
9BDL|1|A28S|G|2039
9BDL|1|A28S|A|2040
9BDL|1|A28S|A|2041
9BDL|1|A28S|A|2042
9BDL|1|A28S|A|2043
9BDL|1|A28S|U|2044
9BDL|1|A28S|G|2045
9BDL|1|A28S|G|2046
9BDL|1|A28S|A|2047
9BDL|1|A28S|U|2048
9BDL|1|A28S|G|2049
9BDL|1|A28S|G|2050
9BDL|1|A28S|C|2051
9BDL|1|A28S|G|2052
9BDL|1|A28S|C|2053
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL03
- 60S ribosomal protein L3
- Chain AL10
- Ribosomal protein L10
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL33
- 60S ribosomal protein L35a
- Chain AL40
- Large ribosomal subunit protein eL40
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