IL_9BDL_199

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9BDL|1|A28S|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_199 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0915

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|A|2850
9BDL|1|A28S|G|2851
9BDL|1|A28S|U|2852
9BDL|1|A28S|C|2853
9BDL|1|A28S|G|2854
9BDL|1|A28S|G|2855
*
9BDL|1|A28S|C|3837
9BDL|1|A28S|U|3838
9BDL|1|A28S|G|3839
9BDL|1|A28S|U|3840

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23