IL_9BDL_221

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_221 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2014

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9BDL|1|A28S|C|4133
9BDL|1|A28S|C|4134
9BDL|1|A28S|G|4135
*
9BDL|1|A28S|C|4149
9BDL|1|A28S|G|4150
9BDL|1|A28S|G|4151

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27