IL_9BDL_233

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9BDL|1|A28S|G|4522, 9BDL|1|A28S|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_233 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0809

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BDL|1|A28S|C|4456
9BDL|1|A28S|U|4457
9BDL|1|A28S|C|4458
*
9BDL|1|A28S|G|4520
9BDL|1|A28S|U|4521
9BDL|1|A28S|G|4522
9BDL|1|A28S|A|4523
9BDL|1|A28S|G|4524

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23