IL_9BDL_244

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

9BDL|1|A28S|U|4634, 9BDL|1|A28S|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_244 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2535

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

9BDL|1|A28S|U|4632
9BDL|1|A28S|G|4633
9BDL|1|A28S|U|4634
9BDL|1|A28S|A|4635
9BDL|1|A28S|U|4636
9BDL|1|A28S|G|4637
*
9BDL|1|A28S|C|4662
9BDL|1|A28S|G|4663
9BDL|1|A28S|A|4664
9BDL|1|A28S|A|4665
9BDL|1|A28S|G|4666

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL24

Ribosomal protein L24

Chain AL31

60S ribosomal protein L31