IL_9BDL_247

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9BDL|1|A28S|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_247 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.226

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9BDL|1|A28S|G|4680
9BDL|1|A28S|A|4681
9BDL|1|A28S|U|4682
9BDL|1|A28S|U|4683
9BDL|1|A28S|A|4684
9BDL|1|A28S|U|4685
*
9BDL|1|A28S|A|4705
9BDL|1|A28S|G|4706
9BDL|1|A28S|A|4707
9BDL|1|A28S|A|4708
9BDL|1|A28S|U|4709
9BDL|1|A28S|C|4710

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

Large ribosomal subunit protein uL13

Chain AL40

Large ribosomal subunit protein eL40