IL_9BDN_012

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9BDN|1|A18S|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_012 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1313

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9BDN|1|A18S|G|145
9BDN|1|A18S|G|146
9BDN|1|A18S|A|147
9BDN|1|A18S|U|148
9BDN|1|A18S|A|149
9BDN|1|A18S|A|150
9BDN|1|A18S|C|151
*
9BDN|1|A18S|G|167
9BDN|1|A18S|C|168
9BDN|1|A18S|U|169
9BDN|1|A18S|A|170
9BDN|1|A18S|A|171
9BDN|1|A18S|U|172
9BDN|1|A18S|A|173
9BDN|1|A18S|C|174

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24