IL_9BDN_021

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1152

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BDN|1|A18S|G|411
9BDN|1|A18S|G|412
9BDN|1|A18S|G|413
*
9BDN|1|A18S|C|424
9BDN|1|A18S|G|425
9BDN|1|A18S|A|426
9BDN|1|A18S|U|427
9BDN|1|A18S|U|428
9BDN|1|A18S|C|429

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23