IL_9BDN_026

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

9BDN|1|A18S|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_026 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.434

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BDN|1|A18S|A|529
9BDN|1|A18S|U|530
*
9BDN|1|A18S|A|554
9BDN|1|A18S|A|555
9BDN|1|A18S|U|556

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS30

40S ribosomal protein S30