IL_9BDN_051

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9BDN|1|A18S|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1322

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

9BDN|1|A18S|G|952
9BDN|1|A18S|C|953
9BDN|1|A18S|U|954
9BDN|1|A18S|A|955
9BDN|1|A18S|G|956
*
9BDN|1|A18S|C|967
9BDN|1|A18S|U|968
9BDN|1|A18S|U|969
9BDN|1|A18S|G|970
9BDN|1|A18S|G|971
9BDN|1|A18S|A|972
9BDN|1|A18S|C|973
9BDN|1|A18S|C|974

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AS01

40S ribosomal protein S3a

Chain AS14

Small ribosomal subunit protein uS11