IL_9BDN_058

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0833

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9BDN|1|A18S|G|1168
9BDN|1|A18S|G|1169
9BDN|1|A18S|A|1170
9BDN|1|A18S|G|1171
9BDN|1|A18S|U|1172
9BDN|1|A18S|A|1173
9BDN|1|A18S|U|1174
9BDN|1|A18S|G|1175
*
9BDN|1|A18S|U|1186
9BDN|1|A18S|G|1187
9BDN|1|A18S|A|1188
9BDN|1|A18S|A|1189
9BDN|1|A18S|A|1190
9BDN|1|A18S|C|1191

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL41

eL41

Chain AS23

40S ribosomal protein S23